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🐛 Fix standardize exact matches #94

Merged
merged 2 commits into from
Nov 20, 2024
Merged

🐛 Fix standardize exact matches #94

merged 2 commits into from
Nov 20, 2024

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Zethson
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@Zethson Zethson commented Nov 18, 2024

Related to @felix0097 issue

The newly added test failed before and is what he ran into in his instance. The new implementation:

  1. Explicitly calculates unmatched terms by comparing the input identifiers (mapped_df["__agg__"]) with the field_map.index.
  2. If all terms match directly, synonym mapping and other fallback logic are skipped entirely, preserving the correct results for Plasmablast and cDC.

Signed-off-by: zethson <lukas.heumos@posteo.net>
Signed-off-by: zethson <lukas.heumos@posteo.net>
@Zethson Zethson changed the title 🐛 Fix synonyms search 🐛 Fix standardize exact matches Nov 18, 2024
@falexwolf
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Great!

I'm curious: is the "search on synonyms" logic duplicated across lamindb and bionty? If so, is there still any reason to have this after integrating bionty with lamindb? (I guess this is mostly a question for @sunnyosun)

@Koncopd
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Koncopd commented Nov 19, 2024

I think it doesn't matter much as i will also port the search logic from lamindb to bionty soon.

@falexwolf
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I think it doesn't matter much as i will also port the search logic from lamindb to bionty soon.

That means it's in fact duplicated right now, which was evidently very error prone. Good that this gets consolidated.

@Zethson Zethson requested a review from sunnyosun November 20, 2024 13:34
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@sunnyosun sunnyosun left a comment

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Looks good!

@Zethson Zethson merged commit a7bd725 into main Nov 20, 2024
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@Zethson Zethson deleted the fix/synonyms_search branch November 20, 2024 13:50
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4 participants